Supercomputer Modelling of Spatially-heterogeneous Coagulation using MPI and CUDA

Rishat Zagidullin, Alexander Smirnov, Sergey Matveev, Eugene Tyrtyshnikov

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Citations (Scopus)

    Abstract

    In this work we propose two parallel implementations of numerical method for the two-dimensional advection-coagulation equation: pure CPU and hybrid CPU/GPU. We approximate the advection component across the two dimensional space with use of unstructured grid and finite volume method with flux limiters. Smoluchowski coalescence operator corresponds to the coagulation process. We evaluate it within low complexity ($$O (N \log N)$$) via exploitation of the low-rank skeleton decomposition of coagulation kernel. We decompose spatial grid into the subdomains and solve the model equation in parallel using MPI. Even though we exploit the fast methods for evaluation of coalescence operator it is the most time-consuming part of numerical algorithm. Hence, we test performance of GPU accelerators for corresponding Smolushowski integrals. All in all, we evaluate the efficiency of incorporating MPI and Nvidia CuFFT library for speedup of calculations and obtain almost linear scalability of MPI implementation of our algorithm. We also find that hybrid exploitation of CPUs and GPUs leads to additional speedup of computations by 2–4 times.

    Original languageEnglish
    Title of host publicationSupercomputing - 5th Russian Supercomputing Days, RuSCDays 2019, Revised Selected Papers
    EditorsVladimir Voevodin, Sergey Sobolev
    PublisherSpringer
    Pages403-414
    Number of pages12
    ISBN (Print)9783030365912
    DOIs
    Publication statusPublished - 2019
    Event5th Russian Supercomputing Days Conference, RuSCDays 2019 - Moscow, Russian Federation
    Duration: 23 Sep 201924 Sep 2019

    Publication series

    NameCommunications in Computer and Information Science
    Volume1129 CCIS
    ISSN (Print)1865-0929
    ISSN (Electronic)1865-0937

    Conference

    Conference5th Russian Supercomputing Days Conference, RuSCDays 2019
    Country/TerritoryRussian Federation
    CityMoscow
    Period23/09/1924/09/19

    Keywords

    • Advection-coagulation
    • Hybrid parallelism
    • Unstructured grid

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