SELVa: Simulator of evolution with landscape variation

Elena Nabieva, Georgii A. Bazykin

Research output: Contribution to journalArticlepeer-review

1 Citation (Scopus)

Abstract

Organisms evolve to increase their fitness, a process that may be described as climbing the fitness landscape. However, the fitness landscape of an individual site, i.e., the vector of fitness values corresponding to different variants at this site, can itself change with time due to changes in the environment or substitutions at other epistatically interacting sites. While there exist a number of simulators for modeling different aspects of molecular evolution, very few can accommodate changing landscapes. We present SELVa, the Simulator of Evolution with Landscape Variation, aimed at modeling the substitution process under a changing single-position fitness landscape in a set of evolving lineages that form a phylogeny of arbitrary shape. Written in Java and distributed as an executable jar file, SELVa provides a flexible framework that allows the user to choose from a number of implemented rules governing landscape change.

Original languageEnglish
Article numbere0242225
JournalPLoS ONE
Volume15
Issue number12 December
DOIs
Publication statusPublished - Dec 2020

Fingerprint

Dive into the research topics of 'SELVa: Simulator of evolution with landscape variation'. Together they form a unique fingerprint.

Cite this