Protein structure prediction from analogy. I. New database of spatially similar and dissimilar structures of protein domains for testing and optimization of prediction methods

M. I. Lobanov, N. S. Bogatyreva, D. N. Ivankov, A. V. Finkel'shteǐn

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Abstract

The paper describes creation and analysis of a database 3Dfold_test. This database consists of a large set of pairs of spatially-similar structures of protein domains and of an accompanying, much larger control set of "decoys", i.e., spatially-dissimilar protein structures, having approximately the same size and compactness as each member of a pair of spatially-similar proteins. The database 3Dfold_test can be found at the site http://phys.protres.ru/resources/prediction analogy/3Dfold/.

Original languageEnglish
Pages (from-to)722-732
Number of pages11
JournalMolekulyarnaya Biologiya
Volume43
Issue number4
Publication statusPublished - Jul 2009
Externally publishedYes

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