Predominant patterns of splicing evolution on human, chimpanzee and macaque evolutionary lineages

Jieyi Xiong, Xi Jiang, Angeliki Ditsiou, Yang Gao, Jing Sun, Elijah D. Lowenstein, Shuyun Huang, Philipp Khaitovich

    Research output: Contribution to journalArticlepeer-review

    9 Citations (Scopus)

    Abstract

    Although splicing is widespread and evolves rapidly among species, the mechanisms driving this evolution, as well as its functional implications, are not yet fully understood. We analyzed the evolution of splicing patterns based on transcriptome data from five tissues of humans, chimpanzees, rhesus macaques and mice. In total, 1526 exons and exon sets from 1236 genes showed significant splicing differences among primates. More than 60% of these differences represent constitutive-toalternative exon transitions while an additional 25% represent changes in exon inclusion frequency. These two dominant evolutionary patterns have contrasting conservation, regulation and functional features. The sum of these features indicates that, despite their prevalence, constitutive-to-alternative exon transitions do not substantially contribute to long-term functional transcriptome changes. Conversely, changes in exon inclusion frequency appear to be functionally relevant, especially for changes taking place in the brain on the human evolutionary lineage.

    Original languageEnglish
    Pages (from-to)1474-1485
    Number of pages12
    JournalHuman Molecular Genetics
    Volume27
    Issue number8
    DOIs
    Publication statusPublished - 15 Apr 2018

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