Impact of methylations of m2G966/m5C967 in 16S rRNA on bacterial fitness and translation initiation

Dmitry E. Burakovsky, Irina V. Prokhorova, Petr V. Sergiev, Pohl Milón, Olga V. Sergeeva, Alexey A. Bogdanov, Marina V. Rodnina, Olga A. Dontsova

Research output: Contribution to journalArticlepeer-review

37 Citations (Scopus)

Abstract

The functional centers of the ribosome in all organisms contain ribosomal RNA (rRNA) modifications, which are introduced by specialized enzymes and come at an energy cost for the cell. Surprisingly, none of the modifications tested so far was essential for growth and hence the functional role of modifications is largely unknown. Here, we show that the methyl groups of nucleosides m 2G966 and m5C967 of 16S rRNA in Escherichia coli are important for bacterial fitness. In vitro analysis of all phases of translation suggests that the m2G966/m5C967 modifications are dispensable for elongation, termination and ribosome recycling. Rather, the modifications modulate the early stages of initiation by stabilizing the binding of fMet-tRNAfMet to the 30S pre-initiation complex prior to start-codon recognition. We propose that the m2G966 and m 5C967 modifications help shaping the bacterial proteome, most likely by fine-tuning the rates that determine the fate of a given messenger RNA (mRNA) at early checkpoints of mRNA selection.

Original languageEnglish
Pages (from-to)7885-7895
Number of pages11
JournalNucleic Acids Research
Volume40
Issue number16
DOIs
Publication statusPublished - Sep 2012
Externally publishedYes

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