Deep learning framework for mobile microscopy

Anatasiia Kornilova, Mikhail Salnikov, Olga Novitskaya, Maria Begicheva, Egor Sevriugov, Kirill Shcherbakov, Valeriya Pronina, Dmitry V. Dylov

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

2 Citations (Scopus)

Abstract

Mobile microscopy is a promising technology to assist and to accelerate disease diagnostics, with its widespread adoption being hindered by the mediocre quality of acquired images. Although some paired image translation and super-resolution approaches for mobile microscopy have emerged, a set of essential challenges, necessary for automating it in a highthroughput setting, still await to be addressed. The issues like in-focus/out-of-focus classification, fast scanning deblurring, focus-stacking, etc.-all have specific peculiarities when the data are recorded using a mobile device. In this work, we aspire to create a comprehensive pipeline by connecting a set of methods purposely tuned to mobile microscopy: (1) a CNN model for stable in-focus/out-of-focus classification, (2) modified DeblurGAN architecture for image deblurring, (3) FuseGAN model for combining in-focus parts from multiple images to boost the detail. We discuss the limitations of the existing solutions developed for professional clinical microscopes, propose corresponding improvements, and compare to the other state-of-the-art mobile analytics solutions.

Original languageEnglish
Title of host publication2021 IEEE 18th International Symposium on Biomedical Imaging, ISBI 2021
PublisherIEEE Computer Society
Pages324-328
Number of pages5
ISBN (Electronic)9781665412469
DOIs
Publication statusPublished - 13 Apr 2021
Event18th IEEE International Symposium on Biomedical Imaging, ISBI 2021 - Nice, France
Duration: 13 Apr 202116 Apr 2021

Publication series

NameProceedings - International Symposium on Biomedical Imaging
Volume2021-April
ISSN (Print)1945-7928
ISSN (Electronic)1945-8452

Conference

Conference18th IEEE International Symposium on Biomedical Imaging, ISBI 2021
Country/TerritoryFrance
CityNice
Period13/04/2116/04/21

Keywords

  • Convolutional neural networks
  • Deblurring
  • Focus-stacking
  • Mobile microscopy

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