Analogy-based protein structure prediction: I. A new database of spatially similar and dissimilar structures of protein domains for testing and optimizing prediction methods

M. Yu Lobanov, N. S. Bogatyreva, D. N. Ivankov, A. V. Finkel'shtein

Research output: Contribution to journalArticlepeer-review

1 Citation (Scopus)

Abstract

The creation and analysis of the 3Dfold_test database are described. This database comprises a large set of pairs of spatially similar protein domain structures and a larger control set of decoys, spatially dissimilar protein structures with approximately the same size and compactness as each member of each pair. The database is available at http://phys.protres.ru/resources/prediction_analogy/3Dfold/.

Original languageEnglish
Pages (from-to)665-676
Number of pages12
JournalMolecular Biology
Volume43
Issue number4
DOIs
Publication statusPublished - Aug 2009
Externally publishedYes

Keywords

  • 3D structure
  • Alignment
  • Amino acid sequence
  • Decoys
  • Protein
  • Recognition

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